Fillable Estimating False Discovery Rates Under Dependence, with ... - genomine

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NOTE: A different version of this paper has been published as Storey & Tibshirani (2003) PNAS, 100: 9440-9445. In that paper, we derive the methods based on p-values. However, the p-values can be calculated from permutations in a gene non-specific manner (i.e., pooling simulated null statistics across genes). Using this type of p-value is actually equivalent to what is shown below. A proof that they are...
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