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An algorithm is proposed for the conversion of a virtual-bond polypeptide chain ... dual-band chain to a real chain; in applications to real systems, however, the ...
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How to fill out calculation of protein backbone:

01
Determine the primary structure of the protein by identifying the sequence of amino acids.
02
Use specialized software or tools to generate the three-dimensional structure of the protein based on its primary structure.
03
Identify the backbone atoms of the protein, including the alpha carbon, nitrogen, and carbonyl carbon.
04
Calculate the bond lengths and bond angles between these backbone atoms using molecular mechanics or quantum mechanics methods.
05
Determine the torsion angles (phi and psi) for each amino acid residue in the protein backbone using molecular dynamics simulations or other computational methods.
06
With the calculated bond lengths, bond angles, and torsion angles, generate a complete model of the protein backbone.

Who needs calculation of protein backbone?

01
Researchers and scientists studying protein structure and function.
02
Pharmaceutical companies developing drugs targeting specific proteins.
03
Bioinformaticians analyzing protein structures for evolutionary and functional insights.
04
Structural biologists investigating protein-protein interactions or protein-ligand interactions.
05
Scientists interested in understanding protein folding and stability.
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Calculation of protein backbone refers to the process of determining the positions of the constituent atoms in a protein molecule, typically represented by a three-dimensional structure.
The calculation of protein backbone is typically performed by computational biologists, biochemists, or researchers in the field of structural biology.
Filling out the calculation of protein backbone involves utilizing specialized software and algorithms that analyze experimental data, such as X-ray crystallography or NMR spectroscopy, to determine the coordinates of the protein's backbone atoms.
The purpose of calculating the protein backbone is to gain insights into the structure and function of the protein, which is crucial for understanding biological processes, drug design, and molecular modeling.
The calculation of protein backbone typically reports the coordinates (x, y, z) of the backbone atoms, such as alpha-carbon (Cα), nitrogen (N), and carbonyl carbon (C), along with associated data like bond lengths, angles, and torsional angles (phi and psi).
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