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Resolution. Resolution is a measure of the quality of the data that has been collected on the crystal containing the protein or nucleic acid. ... Most crystallographic-defined structures of proteins fall in between these two extremes.
B-factor: “temperature-factor” or “Debye-Waller factor.” A factor that can be applied to the X-ray scattering term for each atom (or for groups of atoms) that describes the degree to which the electron density is spread out.
Free R (also called Free) “is generally considered the most useful global measure of model-to-data agreement”. It is a statistical quantity introduced in 1992 by Axel T. Bringer to assess the quality of a model from X-ray crystallographic data.
The primary information stored in the PDB archive consists of coordinate files for biological molecules. These files list the atoms in each protein, and their 3D location in space. These files are available in several formats (PDB, MACIF, XML).
Electron density maps are the end results of an X-ray structure determination. The maps combine the structural model and the experimentally collected data to represent how well the model fits the data. ... These two maps are then used to correct the model when possible.
Electron density maps are the end results of an X-ray structure determination. The maps combine the structural model and the experimentally collected data to represent how well the model fits the data.
Electron density is the measure of the probability of an electron being present at a specific location.
The current density (electric current per unit area, J=I/A) can be expressed in terms of the free electron density as. The number of atoms per unit volume (and the number free electrons for atoms like copper that have one free electron per atom) is.
The mass of an electron is 9.109382 x 10-31 kg. Therefore, the density is estimated to be 0.0471 kg/m3. (You can neglect volume of the nucleus, which is incredibly small comparably).
Each page should also be formatted with the running heading and page number in the top left margin. In the Table of Contents, the header should be “Contents” and a Roman numeral indicating the page number for the table of contents, distinguishing that these pages are not numerated with the rest of the pages.
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