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Extra view Cell Cycle 11:6, 1062-1069; March 15, 2012; 2012 Lands Bioscience p97/VCP- and Lys48-linked polyubiquitination form a new signaling pathway in DNA damage response Kristian Ramadan Institute
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01
Start by collecting the necessary reagents and equipment for the experiment. This may include the p97vcp enzyme, the substrate protein for ubiquitination, the E1, E2, and E3 enzymes, ATP, and buffer solutions.
02
Set up the reaction mixture by combining the appropriate amounts of each component in a reaction tube. The concentrations and ratios may vary depending on the specific experiment, so refer to the relevant literature or protocols for guidance.
03
Incubate the reaction mixture at the desired temperature for the specified duration. This step allows the enzymatic machinery to catalyze the polyubiquitination process on the lys48 residue of the substrate protein.
04
After the incubation period, stop the reaction by using a specific inhibitor or by adding a denaturing agent, such as SDS. This will prevent further ubiquitination and preserve the products for analysis.
05
Finally, analyze the p97vcp- and lys48-linked polyubiquitination by techniques such as immunoblotting, mass spectrometry, or protein purification. These methods will help determine the efficiency, specificity, and overall outcome of the ubiquitination process.

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In summary, p97vcp- and lys48-linked polyubiquitination play essential roles in protein regulation and degradation. Familiarity with the experimental techniques involved and understanding the relevance of this process to various research fields is crucial for advancing our knowledge of cellular processes and developing novel therapies.
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