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From CEL Files to Annotated Lists of Genes (Part 1) H actor Conrad Bravo e based on slides developed by Rafael A. Primary and Hào Wu PASS, Guanajuato, M Xico e May 3-4, 2010 1/1 Running Example Finding
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From CEL files to refers to the process of converting CEL files, which are raw data files generated by Affymetrix GeneChip microarrays, into a more analyzable format like gene expression values.
Researchers or scientists who work with Affymetrix GeneChip microarrays and need to analyze gene expression data may be required to perform the conversion from CEL files to a more usable format as part of their research or analysis process.
The process of converting CEL files to a more analyzable format like gene expression values can be done using various software or programming tools that are specifically designed for this purpose. These tools typically provide options to import the CEL files, perform background correction, normalization, and summarize the signal intensities to obtain gene expression values.
The purpose of converting CEL files to a more analyzable format like gene expression values is to enable researchers or scientists to study and analyze gene expression patterns, identify differential gene expression between different samples or conditions, and gain insights into biological processes, diseases, or other molecular mechanisms.
The information that is typically reported after converting CEL files to gene expression values includes the gene identifiers or probe set IDs, corresponding expression values, statistical measures of gene expression levels, and potentially additional information such as annotations, fold changes, or p-values associated with differential expression analysis.
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