Also, did anybody ever think of a web tool that would display phylogeny in easy to digest format? The web version is very much unfinished. A more complete site to use is this: [1] — [2] -- There is discussion of phylogenetic trees at this website: [3] — [4] — [5] — I used the Phil library, which allowed me to run the phylogeny for every gene in the human genome, see, and also generate a single phylogeny from every gene in a set of gene sequences. There are several interesting results in the Phil code: Phylogeny for human genes and genes with no known connections -- a graph-theoretic representation of common ancestry that is quite different from the traditional graph representation of phylogeny. It's really not very exciting, and most likely too complicated for practical use. I thought that was because the gene family trees were actually too complex, with so many links. I just used the “curse of dimensionality” approach: I put a bunch of common-to-near relatives on one graph, and just looked at the closest gene in the graph with respect to their relationships.
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Genome 559 Web page: http://evolution.gs.washington.edu/gs559/yr2009/web/index.html One-minute responses The phylogeny info was mostly review for me, though I DE nicely found it helpful. Given the
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