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Generally Applicable Geneset/Pathway Analysis Weijun Luo (luo_weijun AT yahoo.com) April 25, 2023Abstract In this vignette, we demonstrate the gage package for gene set (enrichment or GSEA) or pathway analysis. The gage package implement the GAGE method. GAGE is generally applicable independent of microarray and RNASeq data attributes including sample sizes, experimental designs, assay platforms, and other types of heterogeneity, and consistently achieves superior performance over other...
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