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MOLECULAR DYNAMIC SIMULATION OF PATCHOULOL BIOTRANSFORMATIONNORUL AFWAN BINTI KAMARUDINMASTER OF ENGINEERING (CHEMICAL) UNIVERSITI MALAYSIA PAHANGMOLECULAR DYNAMIC SIMULATION OF PATCHOULOL BIOTRANSFORMATIONNORUL
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01
Identify the molecular system of interest.
02
Select a suitable force field for your simulation.
03
Prepare the initial molecular structure (e.g., using software like PDB files).
04
Define the simulation parameters (e.g., temperature, pressure, time step).
05
Set up the simulation box and solvating the system if necessary.
06
Perform energy minimization to relax the structure.
07
Equilibrate the system under the desired conditions.
08
Run the molecular dynamics simulation.
09
Analyze the simulation data for insights.

Who needs molecular dynamic simulation of?

01
Researchers in chemistry and biochemistry.
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Pharmaceutical companies developing drug candidates.
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Material scientists studying properties of materials at the atomic level.
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Academics teaching molecular modeling techniques.
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Industries involved in nanotechnology.
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Molecular dynamic simulation is a computational method used to study the physical movements of atoms and molecules, allowing researchers to observe the behavior of molecules over time under various conditions.
Researchers and scientists working in fields such as chemistry, biophysics, and materials science who utilize molecular dynamic simulations in their studies may be required to file documentation related to the simulations.
To fill out a molecular dynamic simulation, one typically needs to specify initial molecular coordinates, define force fields, set simulation parameters, and determine conditions such as temperature and pressure.
The purpose of molecular dynamic simulation is to provide insights into the dynamical behavior of complex molecular systems, aiding in the understanding of their properties and interactions at an atomic level.
Information that must be reported includes the simulation parameters, force fields used, the initial configuration of molecules, temperature and pressure conditions, as well as the results and observations from the simulation.
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