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Caveats
The process model for tRNA folding is far from perfect (at least as designed by myself) and does not include some key features. I do plan on writing a new paper this year to add in some more features which may be useful, and hope to publish it by the end of this year and in 2011.
Although the method is robust and relatively simple to implement there is some room for expansion, but the number of folds may become prohibitively large.
The model doesn't account for the interactions between the molecules. As the model is derived from the data, these interactions might be very relevant for the folding process.
There is no method for calculating the average length of the folded proteins and their associated folding.
I have been working on this problem by trial and error since 2007 and have been very excited to see progress. However, I would greatly appreciate your feedback and comments. Thanks in advance!
A note about protein folding. We are often asked if the RNA-mediated process of tRNA folding (hereafter TLF) is a simple self-equilibrating process or if there are various levels of interaction which could lead to either an unstable or a stable model. However, this is a very difficult question, and one to be addressed in future research. The RNA-mediated folding process described here is considered to be very robust to the interactions with proteins involved. For more information, read this paper by Dr. Paul S.
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Informal n Tenor Gina Vol. 21(6), 27-36 (2010)de RNA Apical n de e-aprendizaje a t-aprendizaje Process de Adaptaci n Acevedo DOI:10.1612/inf.tecnol.4406it.09 Process de Adaptaci n de RNA Apical n
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